plot_ES {TFEA.ChIP} | R Documentation

## Plots Enrichment Score from the output of GSEA.run.

### Description

Function to plot the Enrichment Score of every member of the ChIPseq binding database.

### Usage

    plot_ES(
      GSEA_result,
      LFC,
      plot_title = NULL,
      specialTF = NULL,
      TF_colors = NULL,
      Accession = NULL,
      TF = NULL
    )

### Arguments

`GSEA_result` | Returned by GSEA_run
`LFC` | Vector with log2(Fold Change) of every gene that has an Entrez ID. Arranged from higher to lower.
`plot_title` | (Optional) Title for the plot
`specialTF` | (Optional) Named vector of TF symbols -as written in the enrichment table- to be highlighted in the plot. The name of each element specifies its color group, i.e.: naming elements HIF1A and HIF1B as 'HIF' to represent them with the same color.
`TF_colors` | (Optional) Colors to highlight TFs chosen in specialTF.
`Accession` | (Optional) restricts plot to the indicated list dataset IDs.
`TF` | (Optional) restricts plot to the indicated list transcription factor names.

### Value

Plotly object with a scatter plot -Enrichment scores- and a heatmap -log2(fold change) bar-.

### Examples

    data('GSEA.result','log2.FC',package = 'TFEA.ChIP')
    TF.hightlight<-c('GATA2')
    names(TF.hightlight)<-c('GATA2')
    col<- c('red')
    plot_ES(GSEA.result,log2.FC,specialTF = TF.hightlight,TF_colors = col)

[Package TFEA.ChIP version 1.12.0 Index]