GSEA_ESpermutations {TFEA.ChIP} | R Documentation

## Calculate enrichment scores for a permutation test.

### Description

Function to calculate enrichment scores over a randomly ordered gene list.

### Usage

    GSEA_ESpermutations(
      gene.list,
      gene.set,
      weighted.score.type = 0,
      correl.vector = NULL,
      perms = 1000
    )

### Arguments

`gene.list` | Vector of gene Entrez IDs.
`gene.set` | A gene set, e.g. gene IDs corresponding to a ChIP-Seq experiment's peaks.
`weighted.score.type` | Type of score: weight: 0 (unweighted = Kolmogorov-Smirnov), 1 (weighted), and 2 (over-weighted)
`correl.vector` | A vector with the coorelations (such as signal to noise scores) corresponding to the genes in the gene list
`perms` | Number of permutations

### Value

Vector of Enrichment Scores for a permutation test. gene.set=c('2034','112399','405'), perms=10)

[Package TFEA.ChIP version 1.12.0 Index]