GDCquery_ATAC_seq {TCGAbiolinks} | R Documentation

## Retrieve open access ATAC-seq files from GDC server

### Description

Retrieve open access ATAC-seq files from GDC server https://gdc.cancer.gov/about-data/publications/ATACseq-AWG Manifest available at: https://gdc.cancer.gov/files/public/file/ATACseq-AWG_Open_GDC-Manifest.txt

### Usage

    GDCquery_ATAC_seq(tumor = NULL, file.type = NULL)

### Arguments

`tumor` | a valid tumor
`file.type` | Write maf file into a csv document

### Value

A data frame with the maf file information

### Examples

     query <- GDCquery_ATAC_seq(file.type = "txt")
    ## Not run:
       GDCdownload(query)

    ## End(Not run)
    query <- GDCquery_ATAC_seq(tumor = "BRCA",file.type = "bigWigs")
    ## Not run:
       GDCdownload(query,method = "client")

    ## End(Not run)

[Package TCGAbiolinks version 2.20.1 Index]