geneDepth {SigFuge} | R Documentation

## Coverage matrix across CDKN2A gene locus

### Description

A dataset containing read depths for 179 lung squamous cell carcinoma samples across the CDKN2A locus.

### Usage

    data(geneDepth)

### Format

A 2078 x 179 `data.frame` of read depth (coverage). Each column corresponds to a sample and each row to a base position along the CDKN2A locus. These RNA-Seq read counts are a subset from 179 lung squamous cell tumor samples sequenced as part of the Cancer Genome Atlas.

### Source

The Cancer Genome Atlas Research Network. (2012) Comprehensive genomic characterization of squamous cell lung cancers. Nature 489: 519-525.

[Package SigFuge version 1.30.0 Index]