STATegRa_data {STATegRa} | R Documentation

## STATegRa data

### Description

mRNA data (`Block1`), miRNA data (`Block2`) and the design matrix (`ed`), from `STATegRa_S1`, provides selected data downloaded from https://tcga-data.nci.nih.gov/docs/publications/gbm_exp/. The mapping between miRNA and mRNA (`mapdata`, available in `STATegRa_S2`) contains, as a processed matrix, selected information available from TargetScan; we selected the set of miRNA target predictions for humans for those miRNA-mRNA pairs where both miRNA and mRNA were in `Block1` and `Block2` respectively.

The PCA version of the data (`Block1.PCA`, `Block2.PCA`, `ed.PCA`; available in `STATegRa_S3`), provides a similar data-set to `Block1`, `Block2` and `ed` data; however in this case the data has been processed in order to provide a pedagogic example of OmicsPCA. Results obtained from OmicsPCA (`omicsCompAnalysis`) with the existing data should not be taken as clinically valid.

### Format

Two matrices with mRNA and miRNA expression data, a design matrix that describes both and a mapping between miRNA and genes.

### Author(s)

David Gomez-Cabrero, Patricia Sebastian-Leon, Gordon Ball

### Source

(a) See https://tcga-data.nci.nih.gov/docs/publications/gbm_exp/. (b) Gabor Csardi, `targetscan.Hs.eg.db`: TargetScan miRNA target predictions for human. R package version 0.6.1

### Examples

    data(STATegRa_S1)
    data(STATegRa_S2)
    data(STATegRa_S3)

[Package STATegRa version 1.28.0 Index]