detectionCall {Rsubread} | R Documentation

## Determine Detection P Values for Each Gene in an RNA-seq Dataset

### Description

Use GC content adjusted background read counts to determine the detection p values for each gene

### Usage

    detectionCall(

        dataset,
        species = "hg",
        plot = FALSE)

### Arguments

`dataset` | a character string giving the filename of a SAM format file, which is the output of read alignment.
`species` | a character string specifing the species. Options are `hg` and `mm`.
`plot` | logical indicating whether a density plot of detection p values will be generated.

### Value

A data frame which includes detection p values and annotation information for each gene.

### Author(s)

Zhiyin Dai and Wei Shi

[Package Rsubread version 2.6.4 Index]