rqcCycleAverageQualityCalc {Rqc} | R Documentation

## Per cycle average quality by files

### Description

This function plots line graph of per cycle average quality.

### Usage

    rqcCycleAverageQualityCalc(rqcResultSet)

    rqcCycleAverageQualityPlot(rqcResultSet)

### Arguments

`rqcResultSet` | list of `RqcResultSet` objects created by `rqc` and `rqcQA` functions.

### Value

ggplot2 object

### Functions

- `rqcCycleAverageQualityCalc`: calculates necessary statistics

### Author(s)

Welliton Souza

### See Also

`rqcGroupCycleAverageQualityPlot` plots cycle-specific quality by groups

### Examples

    checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
      folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
      files <- list.files(full.names=TRUE, path=folder)
      rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
    }, keep="rqcResultSet")
    rqcCycleAverageQualityPlot(rqcResultSet)

[Package Rqc version 1.26.0 Index]