Package: RiboDiPA
Type: Package
Title: Differential pattern analysis for Ribo-seq data
Date: 2020-10-31
Version: 1.0.0
Authors@R: 
    c(person(given = "Keren",
             family = "Li",
             role = c("aut"),
             email = "keren.li@northwestern.edu"),
      person(given = "Matt",
             family = "Hope",
             role = "aut"),
      person(given = "Xiaozhong",
             family = "Wang",
             role = "aut"),
      person(given = "Ji-Ping",
             family = "Wang",
             role = c("aut","cre"),
             email = "jzwang@northwestern.edu"))
Description: This package performs differential pattern analysis for Ribo-seq data. It identifies genes with significantly different patterns in the ribosome footprint between two conditions. RiboDiPA contains five major components including bam file processing, P-site mapping, data binning, differential pattern analysis and footprint visualization. 
License: LGPL (>= 3)
Encoding: UTF-8
LazyData: true
Imports: Rcpp (>= 1.0.2), graphics, stats, data.table, elitism,
        methods, S4Vectors, IRanges, GenomicRanges, matrixStats,
        reldist, doParallel, foreach, parallel, qvalue, DESeq2,
        ggplot2, BiocFileCache
LinkingTo: Rcpp
Depends: R (>= 4.1), Rsamtools, GenomicFeatures, GenomicAlignments
NeedsCompilation: yes
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: RiboSeq, GeneExpression, GeneRegulation,
        DifferentialExpression, Sequencing, Coverage, Alignment,
        RNASeq, ImmunoOncology, QualityControl, DataImport, Software,
        Normalization
git_url: https://git.bioconductor.org/packages/RiboDiPA
git_branch: RELEASE_3_13
git_last_commit: a39b378
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
Packaged: 2021-05-20 02:03:37 UTC; biocbuild
Author: Keren Li [aut],
  Matt Hope [aut],
  Xiaozhong Wang [aut],
  Ji-Ping Wang [aut, cre]
Maintainer: Ji-Ping Wang <jzwang@northwestern.edu>
Built: R 4.1.0; i386-w64-mingw32; 2021-05-20 09:45:52 UTC; windows
Archs: i386, x64
