qcSummary {Rfastp} | R Documentation

## Summary of Fastq Quality Control

### Description

generate a data frame of the Fastq QC summary.

### Usage

    qcSummary(json)

### Arguments

`json` | the output json of function rfastq. [json]

### Value

a data frame.

### Author(s)

Wei Wang

### Examples

    outputPrefix <- tempfile(tmpdir = tempdir())
    se_read1 <- system.file("extdata","Fox3_Std_small.fq.gz",package="Rfastp")
    se_json_report <- rfastp(read1 = se_read1, outputFastq = outputPrefix,
       thread = 4)
    df_summary <- qcSummary(se_json_report)

[Package Rfastp version 1.2.0 Index]