reexports {RegEnrich} | R Documentation

## Objects exported from other packages

### Description

These objects are imported from other packages. Follow the links below to see their documentation.

magrittr

  `%>%`

### Examples

    # library(RegEnrich)
    data("Lyme_GSE63085")
    data("TFs")

    data = log2(Lyme_GSE63085$FPKM + 1)
    colData = Lyme_GSE63085$sampleInfo
    data1 = data[seq(2000), ]

    design = model.matrix(~0 + patientID + week, data = colData)

    # Initializing a 'RegenrichSet' object
    object = RegenrichSet(expr = data1,
                          colData = colData,
                          method = 'limma', minMeanExpr = 0,
                          design = design,
                          contrast = c(rep(0, ncol(design) - 1), 1),
                          networkConstruction = 'COEN',
                          enrichTest = 'FET')

    # Using %>%
    object %>% regenrich_diffExpr()

[Package RegEnrich version 1.2.0 Index]