searchQuery {ReactomeContentService4R} | R Documentation

## Search query

### Description

Search for Reactome objects by name or identifiers.

### Usage

    searchQuery(
      query,
      species = NULL,
      types = NULL,
      compartments = NULL,
      keywords = NULL,
      cluster = TRUE,
      range = NULL
    )

### Arguments

`query` | name or dbId or stId of a search term from any class
`species` | name or taxon id or dbId or abbreviation of species
`types` | type filter, such as "Protein", "Complex", "Reaction", etc
`compartments` | compartment filter, such as "cytosol", "plasma membrane", "nucleoplasm", etc
`keywords` | keyword filter, such as "binds", "phosphorylates", "transports", etc
`cluster` | cluster returned data or not
`range` | start row and the number of rows to include, e.g. `range = c(0, 2)`

### Value

a list of information about the search term

### See Also

`listSearchItems` for available filters

### Examples

    searchQuery(query="Biological oxidation", species="Mus musculus", types=c("Pathway", "Reaction"))

[Package ReactomeContentService4R version 1.0.0 Index]