convertToTargetRegions {RcisTarget} | R Documentation

## convertToTargetRegions

### Description

Convert a set of input regions to the overlapping regions in the target set.

### Usage

    convertToTargetRegions(
      queryRegions,
      targetRegions,
      minOverlap = 0.4,
      overlapType = "any",
      returnCorrespondence = FALSE,
      verbose = TRUE
    )

### Arguments

`queryRegions` | List of regions to convert (normally the query region set).
`targetRegions` | List of regions in the target set (normally the database).
`minOverlap` | Minimum overlap to consider (in either direction, default: 0.40).
`overlapType` | Parameter for `findOverlaps` (default: "any")
`returnCorrespondence` | Returns a table containing the matches, or only a list of overlapping regions (default: FALSE).
`verbose` | Print the number of regions selected?

### Value

IDs of the regions in the "target regions" overlapping with the query regions.

### See Also

`getDbRegionsLoc`.

See the package vignette for examples and more details: `vignette("RcisTarget")`

### Examples

    ## Not run:
     ## To apply on a list of regionSets:
     regionSets_db <- lapply(regionSets, function(x)
        convertToTargetRegions(queryRegions=x, targetRegions=dbRegionsLoc))

    ## End(Not run)

[Package RcisTarget version 1.12.0 Index]