avs.get {RTN} | R Documentation

## Get information from individual slots in an AVS object.

### Description

Get information from individual slots in an AVS object.

### Usage

    avs.get(object, what="summary", report=FALSE, pValueCutoff=NULL)

### Arguments

`object` | an object of class 'AVS' `AVS-class`.
`what` | a single character value specifying which information should be retrieved from the slots. Options: 'markers', 'validatedMarkers', 'variantSet', 'randomSet', 'linkedMarkers', 'randomMarkers', 'vse', 'evse', 'rvse', 'pevse', 'annotation.vse', 'annotation.evse', 'annotation.rvse', 'annotation.pevse', 'summary' and 'status'.
`report` | a single logical value indicating whether to return results from 'vse', 'evse' as a consolidated table (if TRUE), or as they are (if FALSE).
`pValueCutoff` | an optional single numeric value specifying the cutoff to retrive results for p-values considered significant.

### Value

get the slot content from an object of class 'AVS' `AVS-class`.

### Author(s)

Mauro Castro

### Examples

    ## Not run:
    #This example requires the RTNdata package! (currently available under request)
    library(RTNdata.LDHapMapRel27)
    data(bcarisk, package="RTNdata.LDHapMapRel27")
    bcavs <- avs.preprocess.LDHapMapRel27(bcarisk, nrand=1000)
    avs.get(avs)

    ## End(Not run)

[Package RTN version 2.16.0 Index]