avs.plot2 {RTN} | R Documentation

## Plot results from AVS methods, multiple plots.

### Description

This function takes an AVS object and plots results from the VSE and EVSE methods.

### Usage

    avs.plot2(object, what="evse", fname=what, width=14, height=2.5,
    width.panels=c(1,3), rmargin=1, at.x=seq(-4,8,2), decreasing=TRUE,
    ylab="Annotation", xlab="Clusters of risk-associated and linked SNPs",
    tfs=NULL)

### Arguments

`object` | an object of class 'AVS' `AVS-class`.
`what` | a single character value specifying which analysis should be used. Options: "vse" and "evse".
`fname` | a character value specifying the name of output file.
`height` | a numeric value specifying the height of the graphics region in inches.
`width` | a numeric value specifying the width of the graphics region in inches.
`width.panels` | a vector of the form c(width1, width2) specifying the proportional width of the 1st and 2nd panels of the plot, respectively.
`rmargin` | a numeric value specifying the right margin in inches.
`at.x` | a numeric vector specifying which x-axis tickpoints are to be drawn.
`decreasing` | a logical value, used to sort by EVSE scores.
`ylab` | a character value specifying the y-axis label.
`xlab` | a character value specifying the x-axis label (on the top of the grid image).
`tfs` | an optional vector with annotation identifiers (e.g. transcription factor).

### Value

A plot showing results from the VSE and EVSE methods.

### Author(s)

Mauro Castro

### Examples

    # see 'avs.vse' and 'avs.evse' methods.

[Package RTN version 2.16.0 Index]