keggPathwayNames {ROntoTools} | R Documentation

## Obtain KEGG pathway titles

### Description

Obtain KEGG pathway titles

### Usage

    keggPathwayNames(organism = "hsa", updateCache = FALSE, verbose = TRUE)

### Arguments

`organism` | organism code as defined by KEGG
`updateCache` | re-download KEGG data
`verbose` | show progress of downloading and parsing

### Value

A named vector of pathway titles. The names of the vector are the pathway KEGG IDs.

### Author(s)

Calin Voichita and Sorin Draghici

### See Also

`keggPathwayGraphs`

### Examples

    kpn <- keggPathwayNames("hsa")

    # to update the pathway cache for human run:
    # kpn <- keggPathwayNames("hsa", updateCache = TRUE)
    # this is time consuming and depends on the available bandwidth.

    head(kpn)

[Package ROntoTools version 2.20.0 Index]