processProblematicPeaks {RMassBank} | R Documentation

## Generate list of problematic peaks

### Description

Generates a list of intense unmatched peaks for further review (the "failpeak list") and exports it if the archive name is given.

### Usage

    processProblematicPeaks(w, archivename = NA)

### Arguments

`w` | `msmsWorkspace` to analyze.
`archivename` | Base name of the archive to write to (for "abc" the exported failpeaks list will be "abc_Failpeaks.csv"). if the compoundlist is complete, "tentative", if at least a formula is present or "unknown" if the only know thing is the m/z
`mode` | Processing mode (pH etc)

### Value

Returns the aggregate data.frame with added column "`problematic`" (logical) which marks peaks which match the problematic criteria

### Author(s)

stravsmi

[Package RMassBank version 3.2.0 Index]