drawingKaryo {RIPAT} | R Documentation

## Draw the karyogram plot.

### Description

Draw a karyogram plot and show integration site.

### Usage

    drawingKaryo(hits, feature, organism = 'GRCh37',
                 includeUndecided = FALSE, outPath = getwd(),
                 outFileName = paste0('RIPAT', round(unclass(Sys.time()))))

### Arguments

`hits` | a GR object. This object made from `makeInputObj` function.
`feature` | a GR object. This object made from annotation function.
`organism` | a character vector. This function serves 2 versions of organisms such as GRCh37, GRCh38 (Human). Default is 'GRCh37'.
`includeUndecided` | TRUE or FALSE. If user want to use undecided hits in analysis, enter TRUE. Default is FALSE.
`outPath` | a string vector. Type path to save a plot.
`outFileName` | a character vector. This value used when saving the idegoram image file.

### Value

Return the ideogram plot and object.

### Examples

    data(blast_obj)
    data(blast_gene)
    drawingKaryo(hits = blast_obj, feature = blast_gene$Gene_data, outFileName = 'blast_res')

[Package RIPAT version 1.2.0 Index]