upload_dataset {RGMQL} | R Documentation

## Upload dataset

### Description

It uploads a folder (GMQL or not) containing sample files using the proper GMQL web service available on a remote server: a new dataset is created on remote repository

### Usage

    upload_dataset(url, datasetName, folderPath, schemaName = NULL)

### Arguments

`url` | string url of server: It must contain the server address and base url; service name is added automatically
`datasetName` | name of dataset to create in repository
`folderPath` | string local path to the folder containing the samples files
`schemaName` | string name of schema used to parse the samples; schemaName available are: NARROWPEAK BROADPEAK VCF BED BEDGRAPH if schemaName is NULL, it looks for a XML schema file to read in the folderPath

### Details

If no error occurs, it prints "Upload Complete", otherwise a specific error is printed

NOTE: The folder layout must obey the following rules and adopt the following layout: The dataset folder can have any name, but must contains the sub-folders named: "files". The sub-folder "files" contains the dataset files and the schema xml file. The schema files adopt the following the naming conventions:

- "schema.xml" - "test.schema"

The names must be in LOWERCASE. Any other schema file will not be conisdered, if both are present, "test.schema" will be used.

### Value

None

### Examples

    ## Not run:

    ## This statement defines the path to the folder "DATASET_GDM" in the
    ## subdirectory "example" of the package "RGMQL"

    test_path <- system.file("example", "DATASET_GDM", package = "RGMQL")

    ## Login to GMQL REST services suite at remote url

    remote_url <- "http://www.gmql.eu/gmql-rest/"
    login_gmql(remote_url)

    ## Upload of GMQL dataset with "dataset1" as name, without specifying any
    ## schema

    upload_dataset(remote_url, "dataset1", folderPath = test_path)

    ## End(Not run)

[Package RGMQL version 1.12.4 Index]