frequencyPlot {QDNAseq} | R Documentation

## Plot copy number aberration frequencies

### Description

Plot copy number aberration frequencies.

### Usage

    frequencyPlot(x, y, ...)

### Arguments

`x` | A `QDNAseqCopyNumbers` object with `calls` data.
`y` | missing
`...` | ...

### Author(s)

Ilari Scheinin

### Examples

    data(LGG150)
    readCounts <- LGG150
    readCountsFiltered <- applyFilters(readCounts)
    readCountsFiltered <- estimateCorrection(readCountsFiltered)
    copyNumbers <- correctBins(readCountsFiltered)
    copyNumbersNormalized <- normalizeBins(copyNumbers)
    copyNumbersSmooth <- smoothOutlierBins(copyNumbersNormalized)
    copyNumbersSegmented <- segmentBins(copyNumbersSmooth)
    copyNumbersSegmented <- normalizeSegmentedBins(copyNumbersSegmented)
    copyNumbersCalled <- callBins(copyNumbersSegmented)
    frequencyPlot(copyNumbersCalled)

[Package QDNAseq version 1.28.0 Index]