genAnnotationFiles {PloGO2} | R Documentation

## Function to generate a format in Wego native style from a list of Uniprot identifiers

### Description

Given a Excel spreadsheet with multiple tabs, generate a Wego file for each tab using a pre-download DB file.

### Usage

    genAnnotationFiles(fExcelName,  colName="Uniprot",
    				DB.name = "pathwayDB.csv", folder="PWFiles",outFolder=tempdir())

### Arguments

`fExcelName` | An excel file containing one or multiple tabs of protein IDs. For example, the proteins in each tab come from the same cluster.
`colName` | The column name of the protein ID.
`DB.name` | The database file name, in .csv format.
`folder` | The folder name for saving the generated files.
`outFolder` | The output files folder

### Value

The folder path for generated annotation files.

### Author(s)

J. Wu

### Examples

    path <- system.file("files", package = "PloGO2")

    genAnnotationFiles(fExcelName = file.path(path, "ResultsWGCNA_Input4PloGO2.xlsx"),
    				colName="Uniprot",
    				DB.name = file.path(path, "pathwayDB.csv"))

[Package PloGO2 version 1.4.0 Index]