createFrequencyMat {PhosR} | R Documentation

## Create frequency matrix

### Description

Create frequency matrix

### Usage

    createFrequencyMat(substrates.seq)

### Arguments

`substrates.seq` | A substrate sequence

### Value

A frequency matrix of amino acid from substrates.seq.

### Examples

    data("phospho_L6_ratio_pe")

    # We will create a frequency matrix of Tfg S198 phosphosite.
    idx = which(grepl("TFG\\;S198\\;", rownames(phospho.L6.ratio.pe)))
    substrate.seq = Sequence(phospho.L6.ratio.pe)[idx]
    freq.mat = createFrequencyMat(substrate.seq)

[Package PhosR version 1.2.0 Index]