plotKinaseNetwork {PhosR} | R Documentation

## Plot kinase network

### Description

Plot kinase network

### Usage

    plotKinaseNetwork(KSR, predMatrix, threshold = 0.9, color,
    type = NULL, verbose = FALSE)

### Arguments

`KSR` | Kinase-substrate relationship scoring results
`predMatrix` | Output of kinaseSubstratePred function
`threshold` | Threshold used to select interconnected kinases for the expanded signalomes
`color` | A string specifying the color vector for nodes
`type` | A type (`graph` or `chord`) of plot. If NULL, network graph is plotted
`verbose` | Default to `TRUE` to show messages during the progress. All messages will be suppressed if set to `FALSE`

### Value

a graphical plot

[Package PhosR version 1.2.0 Index]