PWM-class {PWMEnrich} | R Documentation

## A class that represents a Position Weight Matrix (PWM)

### Description

A class that represents a Position Weight Matrix (PWM)

### Slots

`id`:

  a systematic ID given to this PWM, could include the source, version, etc

`name`:

  the name of the transcription factor (TF) to which the PWM corresponds to

`pfm`:

  Position Frequency Matrix (PFM) from which the PWM is derived

`prior.params`:

  Defines prior frequencies of the four bases (A,C,G,T), a named vector. These will be added to individual values for the PFM and at the same time used as background probabilities

`pwm`:

  Final Position Weight Matrix (PWM) constructed using prior.params with logarithm base 2

[Package PWMEnrich version 4.28.1 Index]