motifScoresBigMemory {PWMEnrich} | R Documentation

## This is a memory intensive version of motifScore() which is about 2 times faster

### Description

The parameters and functionality are the same as `motifScores`. Please refer to documentation of this function for detailed explanation of functionality.

### Usage

    motifScoresBigMemory(
      sequences,
      motifs,
      raw.scores = FALSE,
      verbose = TRUE,
      cutoff = NULL,
      seq.all = NULL
    )

### Arguments

`sequences` | set of input sequences
`motifs` | set of input PWMs or PFMs
`raw.scores` | if to return scores for each base-pair
`verbose` | if to produce verbose output
`cutoff` | the cutoff for calling binding sites (in base 2 log).
`seq.all` | already concatenated sequences if already available (used to internally speed up things)

### Details

This function is not meant to be called directly, but is indirectly called by motifScores() once a global parameters useBigMemory is set.

### See Also

`motifScores`

[Package PWMEnrich version 4.28.1 Index]