allFitnessEffects	allFitnessEffects
allMutatorEffects	allFitnessEffects
benchmark_1	benchmarks
benchmark_1_0.05	benchmarks
benchmark_2	benchmarks
benchmark_3	benchmarks
diversityLOD	POM
diversityPOM	POM
evalAllGenotypes	evalAllGenotypes
evalAllGenotypesFitAndMut	evalAllGenotypes
evalAllGenotypesMut	evalAllGenotypes
evalGenotype	evalAllGenotypes
evalGenotypeFitAndMut	evalAllGenotypes
evalGenotypeMut	evalAllGenotypes
examplePosets	examplePosets
examplesFitnessEffects	examplesFitnessEffects
ex_missing_drivers_b11	example-missing-drivers
ex_missing_drivers_b12	example-missing-drivers
LOD	POM
LOD.oncosimul2	POM
LOD.oncosimulpop	POM
Magellan_stats	to_Magellan
mcfLs	mcfLs
oncoSimulIndiv	oncoSimulIndiv
oncoSimulPop	oncoSimulIndiv
oncoSimulSample	oncoSimulIndiv
OncoSimulWide2Long	OncoSimulWide2Long
plot.evalAllGenotypes	plotFitnessLandscape
plot.evalAllGenotypesMut	plotFitnessLandscape
plot.fitnessEffects	plot.fitnessEffects
plot.genotype_fitness_matrix	plotFitnessLandscape
plot.oncosimul	plot.oncosimul
plot.oncosimulpop	plot.oncosimul
plotClonePhylog	plotClonePhylog
plotFitnessLandscape	plotFitnessLandscape
plotPoset	plotPoset
POM	POM
POM.oncosimul2	POM
POM.oncosimulpop	POM
poset	poset
print.oncosimul	oncoSimulIndiv
print.oncosimulpop	oncoSimulIndiv
print.sampledGenotypes	samplePop
rfitness	rfitness
sampledGenotypes	samplePop
samplePop	samplePop
simOGraph	simOGraph
summary.oncosimul	oncoSimulIndiv
summary.oncosimulpop	oncoSimulIndiv
to_Magellan	to_Magellan
woAntibS	freq-dep-simul-examples
