all_uniprots {OmnipathR} | R Documentation

## A table with all UniProt IDs

### Description

Retrieves a table from UniProt with all proteins for a certain organism.

### Usage

    all_uniprots(fields = "id", reviewed = TRUE, organism = 9606)

### Arguments

`fields` | Character vector of fields as defined by UniProt. For possible values please refer to https://www.uniprot.org/help/uniprotkb%5Fcolumn%5Fnames
`reviewed` | Retrieve only reviewed ('TRUE'), only unreviewed ('FALSE') or both ('NULL').
`organism` | Integer, NCBI Taxonomy ID of the organism (by default 9606 for human).

### Value

Data frame (tibble) with the requested UniProt entries and fields.

### Examples

    human_swissprot_ac <- all_uniprots(fields = 'entry name')
    human_swissprot_ac
    # # A tibble: 20,396 x 1
    #    `Entry name`
    #    <chr>
    #  1 OR4K3_HUMAN
    #  2 O52A1_HUMAN
    #  3 O2AG1_HUMAN
    #  4 O10S1_HUMAN
    #  5 O11G2_HUMAN
    # # . with 20,386 more rows

[Package OmnipathR version 3.0.0 Index]