nichenet_signaling_network_evex {OmnipathR} | R Documentation

## NicheNet signaling network from EVEX

### Description

Builds signaling network prior knowledge for NicheNet from the EVEX database.

### Usage

    nichenet_signaling_network_evex(top_confidence = 0.75, indirect = FALSE, ...)

### Arguments

`top_confidence` | Double, between 0 and 1. Threshold based on the quantile of the confidence score.
`indirect` | Logical: whether to include indirect interactions.
`...` | Ignored.

### Value

A network data frame (tibble) with signaling interactions suitable for use with NicheNet.

### See Also

- `evex_download`

- `nichenet_signaling_network`

### Examples

    ev_signaling_network <- nichenet_signaling_network_evex(
        top_confidence = .9
    )

[Package OmnipathR version 3.0.0 Index]