nichenet_signaling_network_pathwaycommons {OmnipathR} | R Documentation

## NicheNet signaling network from PathwayCommons

### Description

Builds signaling network prior knowledge for NicheNet using PathwayCommons.

### Usage

    nichenet_signaling_network_pathwaycommons(
      interaction_types = c("catalysis-precedes", "controls-phosphorylation-of",
        "controls-state-change-of", "controls-transport-of", "in-complex-with",
        "interacts-with"),
      ...
    )

### Arguments

`interaction_types` | Character vector with PathwayCommons interaction types. Please refer to the default value and the PathwayCommons webpage.
`...` | Ignored.

### Value

A network data frame (tibble) with signaling interactions suitable for use with NicheNet.

### Examples

    # use only the "controls-transport-of" interactions:
    pc_signaling_network <- nichenet_signaling_network_pathwaycommons(
        interaction_types = 'controls-transport-of'
    )

[Package OmnipathR version 3.0.0 Index]