nichenet_signaling_network_harmonizome {OmnipathR} | R Documentation

## NicheNet signaling network from Harmonizome

### Description

Builds signaling network prior knowledge for NicheNet using Harmonizome

### Usage

    nichenet_signaling_network_harmonizome(
      datasets = c("phosphositeplus", "kea", "depod"),
      ...
    )

### Arguments

`datasets` | The datasets to use. For possible values please refer to default value and the Harmonizome webpage.
`...` | Ignored.

### Value

A network data frame (tibble) with signaling interactions suitable for use with NicheNet.

### Examples

    # use only KEA and PhosphoSite:
    hz_signaling_network <- nichenet_signaling_network_harmonizome(
        datasets = c('kea', 'phosphositeplus')
    )

[Package OmnipathR version 3.0.0 Index]