htridb_download {OmnipathR} | R Documentation

## Downloads TF-target interactions from HTRIdb

### Description

HTRIdb (https://www.lbbc.ibb.unesp.br/htri/) is a database of literature curated human TF-target interactions. As the database is recently offline, the data is distributed by the OmniPath rescued data repository (https://rescued.omnipathdb.org/).

### Usage

    htridb_download()

### Value

Data frame (tibble) with interactions.

### Examples

    htridb_data <- htridb_download()
    htridb_data
    # # A tibble: 18,630 x 7
    #      OID GENEID_TF SYMBOL_TF GENEID_TG SYMBOL_TG TECHNIQUE
    #    <dbl>     <dbl> <chr>         <dbl> <chr>     <chr>
    #  1 32399       142 PARP1           675 BRCA2     Electrophoretic Mobi.
    #  2 32399       142 PARP1           675 BRCA2     Chromatin Immunoprec.
    #  3 28907       196 AHR            1543 CYP1A1    Chromatin Immunoprec.
    #  4 29466       196 AHR            1543 CYP1A1    Electrophoretic Mobi.
    #  5 28911       196 AHR            1543 CYP1A1    Chromatin Immunoprec.
    # # . with 18,620 more rows, and 1 more variable: PUBMED_ID <chr>

[Package OmnipathR version 3.0.0 Index]