visualizeFeature {OmicsLonDA} | R Documentation

## Visualize Longitudinal Feature

### Description

Visualize Longitudinal Feature

### Usage

    visualizeFeature(se_object = NULL, text = "featureName",
      unit = "days", ylabel = "Normalized Count", col = c("blue",
      "firebrick"), prefix = "Test")

### Arguments

`se_object` | SummarizedExperiment object contains omics count/level matrix and metadata
`text` | feature name
`unit` | time interval unit
`ylabel` | text to be shown on the y-axis of all generated figures (default: "Normalized Count")
`col` | two color to be used for the two groups (eg., c("red", "blue")).
`prefix` | prefix to be used to create directory for the analysis results

### Value

null

### References

Ahmed Metwally (ametwall@stanford.edu)

### Examples

    library(SummarizedExperiment)
    data("omicslonda_data_example")
    omicslonda_se_object_adjusted = adjustBaseline(
                     se_object = omicslonda_data_example$omicslonda_se_object)
    omicslonda_test_object = omicslonda_se_object_adjusted[1,]
    visualizeFeature(se_object = omicslonda_test_object, text = "Feature_1",
                     unit = "days", ylabel = "Normalized Count",
                     col = c("blue", "firebrick"), prefix = tempfile())

[Package OmicsLonDA version 1.8.0 Index]