export.bed12 {ORFik} | R Documentation

## Export as bed12 format

### Description

bed format for multiple exons per group, as transcripts. Can be use as alternative as a sparse .gff format for ORFs. Can be direct input for ucsc browser or IGV

### Usage

    export.bed12(grl, file, rgb = 0)

### Arguments

`grl` | A GRangesList
`file` | a character path to valid output file name
`rgb` | integer vector, default (0), either single integer or vector of same size as grl to specify groups. It is adviced to not use more than 8 different groups

### Details

If grl has no names, groups will be named 1,2,3,4..

### Value

NULL (File is saved as .bed)

### See Also

Other utils: `bedToGR()`, `convertToOneBasedRanges()`, `export.bigWig()`, `export.wiggle()`, `fimport()`, `findFa()`, `fread.bed()`, `optimizeReads()`, `readBam()`, `readBigWig()`, `readWig()`

### Examples

    grl <- GRangesList(GRanges("1", c(1,3,5), "+"))
    # export.bed12(grl, "output/path/orfs.bed")

[Package ORFik version 1.12.13 Index]