trim_detection {ORFik} | R Documentation

## Add trimming info to QC report

### Description

Only works if alignment was done using ORFik with STAR.

### Usage

    trim_detection(df, finals, out.dir)

### Arguments

`df` | an ORFik `experiment`
`finals` | a data.table with current output from QCreport
`out.dir` | optional output directory, default: `dirname(df$filepath[1])`. Will make a folder called "QC_STATS" with all results in this directory. Warning: If you assign not default path, you will have a hazzle to load files later. Much easier to load count tables, statistics, ++ later with default.

### Value

a data.table of the update finals object with trim info

[Package ORFik version 1.12.13 Index]