install.sratoolkit {ORFik} | R Documentation

## Download sra toolkit

### Description

Currently supported for Linux (64 bit centos and ubunutu is tested to work) and Mac-OS(64 bit)

### Usage

    install.sratoolkit(folder = "~/bin", version = "2.10.9")

### Arguments

`folder` | default folder, "~/bin"
`version` | a string, default "2.10.9"

### Value

path to fastq-dump in sratoolkit

### References

https://ncbi.github.io/sra-tools/fastq-dump.html

### See Also

Other sra: `download.SRA.metadata()`, `download.SRA()`, `download.ebi()`, `rename.SRA.files()`

### Examples

    # install.sratoolkit()
    ## Custom folder and version
    folder <- "/I/WANT/IT/HERE/"
    # install.sratoolkit(folder, version = "2.10.7")

[Package ORFik version 1.12.13 Index]