addCdsOnLeaderEnds {ORFik} | R Documentation

## Extends leaders downstream

### Description

When finding uORFs, often you want to allow them to end inside the cds.

### Usage

    addCdsOnLeaderEnds(fiveUTRs, cds, onlyFirstExon = FALSE)

### Arguments

`fiveUTRs` | The 5' leader sequences as GRangesList
`cds` | If you want to extend 5' leaders downstream, to catch uorfs going into cds, include it.
`onlyFirstExon` | logical (F), include whole cds or only first exons.

### Details

This is a simple way to do that

### Value

a GRangesList of cds exons added to ends

### See Also

Other uorfs: `filterUORFs()`, `removeORFsWithSameStartAsCDS()`, `removeORFsWithSameStopAsCDS()`, `removeORFsWithStartInsideCDS()`, `removeORFsWithinCDS()`, `uORFSearchSpace()`

[Package ORFik version 1.12.13 Index]