import.bedoc {ORFik} | R Documentation

## Load GAlignments object from .bedoc

### Description

A much faster way to store, load and use bam files.
.bedoc is .bed ORFik, an optimized bed format for coverage reads with cigar and replicate number.
.bedoc is a text based format with columns (5 maximum):
1. chromosome
2. cigar: (cigar # M's, match/mismatch total)
3. start (left most position)
4. strand (+, -, *)
5. score: duplicates of that read

### Usage

    import.bedoc(path)

### Arguments

`path` | a character, location on disc (full path)

### Details

Positions are 1-based, not 0-based as .bed. export with export.bedo

### Value

GAlignments object

[Package ORFik version 1.12.13 Index]