config {ORFik} | R Documentation

## Read directory config for ORFik experiments

### Description

Defines a folder for: 1. fastq files (raw_data)
2. bam files (processed data)
3. references (organism annotation and STAR index)

### Usage

    config(file = "~/Bio_data/ORFik_config.csv")

### Arguments

`file` | file of config for ORFik, default: "~/Bio_data/ORFik_config.csv"

### Details

Update or use another config using `config.save()` function.

### Value

a named character vector of length 3

### Examples

    ## Make with default config path
    #config()
    ## Load another config (not adviced!)
    config_location <- "/media/Bio_data/ORFik_config.csv"
    #config(config_location)

[Package ORFik version 1.12.13 Index]