findNewTSS {ORFik} | R Documentation

## Finds max peaks per trancsript from reads in the cagefile

### Description

Finds max peaks per trancsript from reads in the cagefile

### Usage

    findNewTSS(fiveUTRs, cageData, extension, restrictUpstreamToTx)

### Arguments

`fiveUTRs` | The 5' leader sequences as GRangesList
`cageData` | The CAGE as GRanges object
`extension` | The number of basses to extends transcripts upstream.
`restrictUpstreamToTx` | a logical (FALSE), if you want to restrict leaders to not extend closer than 5 bases from closest upstream leader, set this to TRUE.

### Value

a Hits object

[Package ORFik version 1.12.13 Index]