matchSeqStyle {ORFik} | R Documentation

## A wrapper for seqlevelsStyle

### Description

To make sure chromosome naming is correct (chr1 vs 1 vs I etc)

### Usage

    matchSeqStyle(range, chrStyle = NULL)

### Arguments

`range` | a ranged object, (GRanges, GAlignment etc)
`chrStyle` | a GRanges object, TxDb, FaFile, or a `seqlevelsStyle` (Default: NULL) to get seqlevelsStyle from. Is chromosome 1 called chr1 or 1, is mitocondrial chromosome called MT or chrM etc. Will use 1st seqlevel-style if more are present. Like: c("NCBI", "UCSC") -> pick "NCBI"

### Value

a GAlignment/GRanges object depending on input.

[Package ORFik version 1.12.13 Index]