export.bedoc {ORFik} | R Documentation

## Store GAlignments object as .bedoc

### Description

A fast way to store, load and use bam files. (we now recommend using `link{export.ofst}` instead!)
.bedoc is .bed ORFik, an optimized bed format for coverage reads with cigar and replicate number.
.bedoc is a text based format with columns (5 maximum):
1. chromosome
2. cigar: (cigar # M's, match/mismatch total)
3. start (left most position)
4. strand (+, -, *)
5. score: duplicates of that read

### Usage

    export.bedoc(object, out)

### Arguments

`object` | a GAlignments object
`out` | a character, location on disc (full path)

### Details

Positions are 1-based, not 0-based as .bed. Import with import.bedoc

### Value

NULL, object saved to disc

[Package ORFik version 1.12.13 Index]