createNetwork {NoRCE} | R Documentation

## Create interaction network for top n enriched GO term:coding RNA or GO-term:noncoding RNA interaction. Nodes are GO term and RNA, edges are interactions between them. Each GO-term is annotated and enriched with the mRNAs provided from the input list.

### Description

Create interaction network for top n enriched GO term:coding RNA or GO-term:noncoding RNA interaction. Nodes are GO term and RNA, edges are interactions between them. Each GO-term is annotated and enriched with the mRNAs provided from the input list.

### Usage

    createNetwork(
      mrnaObject,
      type = "pvalue",
      n,
      isNonCode = FALSE,
      takeID = FALSE
    )

### Arguments

`mrnaObject` | Output of enrichment results
`type` | Sort in terms of p-values or FDR. Possible values "pvalue", "padjust"
`n` | Number of top enrichments
`isNonCode` | Boolean value that checks whether node of the network is GO-term\& coding or GO-term\& noncoding genes. By default, it is FALSE so node of the network is GO-term\& coding gene. Otherwise, nodes are GO-term\& noncoding genes.
`takeID` | Boolean value that checks the name decision of the GO/pathway node, GO-term/pathway-term or GO ID-pathway ID. If it is true, name of the GO/pathway node will be GO ID/pathway ID will be used, otherwise, name of the GO/pathway node is GO-term. By default, it is FALSE. It is suggested to used when the GO-term is two long or the GO-term is missing for the custom enrichment database.

### Value

Network

[Package NoRCE version 1.4.0 Index]