plot_gene_heatmap {NanoMethViz} | R Documentation

## Plot gene methylation heatmap

### Description

Plot gene methylation heatmap

### Usage

    plot_gene_heatmap(x, gene, ...)

    ## S4 method for signature 'NanoMethResult,character'
    plot_gene_heatmap(
      x,
      gene,
      window_prop = 0.3,
      pos_style = c("to_scale", "compact")
    )

### Arguments

`x` | the NanoMethResult object.
`gene` | the gene symbol for the gene to plot.
`...` | additional arguments
`window_prop` | the size of flanking region to plot. Can be a vector of two values for left and right window size. Values indicate proportion of gene length.
`pos_style` | the style for plotting the base positions along the x-axis. Defaults to "to_scale", plotting (potentially) overlapping squares along the genomic position to scale. The "compact" options plots only the positions with measured modification.

### Value

a ggplot object of the heatmap

a ggplot plot containing the heatmap.

### Examples

    nmr <- load_example_nanomethresult()
    plot_gene_heatmap(nmr, "Peg3")

    nmr <- load_example_nanomethresult()
    plot_gene_heatmap(nmr, "Peg3")

[Package NanoMethViz version 1.2.0 Index]