plot_gene {NanoMethViz} | R Documentation

## Plot gene

### Description

Plot gene

### Usage

    plot_gene(x, gene, ...)

    ## S4 method for signature 'NanoMethResult,character'
    plot_gene(
      x,
      gene,
      window_prop = 0.3,
      anno_regions = NULL,
      spaghetti = FALSE,
      span = NULL,
      gene_anno = TRUE
    )

### Arguments

`x` | the NanoMethResult object.
`gene` | the gene symbol for the gene to plot.
`...` | additional arguments
`window_prop` | the size of flanking region to plot. Can be a vector of two values for left and right window size. Values indicate proportion of gene length.
`anno_regions` | the data.frame of regions to annotate.
`spaghetti` | whether or not individual reads should be shown.
`span` | the span for loess smoothing.
`gene_anno` | whether or not gene annotation tracks are plotted.

### Value

a patchwork plot containing the methylation profile in the specified region.

a patchwork plot containing the methylation profile in the specified region.

### Examples

    nmr <- load_example_nanomethresult()
    plot_gene(nmr, "Peg3")

    nmr <- load_example_nanomethresult()
    plot_gene(nmr, "Peg3")

[Package NanoMethViz version 1.2.0 Index]