methy_to_bsseq {NanoMethViz} | R Documentation

## Create BSSeq object from methylation tabix file

### Description

Create BSSeq object from methylation tabix file

### Usage

    methy_to_bsseq(methy, out_folder = tempdir(), verbose = TRUE)

### Arguments

`methy` | the path to the methylation tabix file.
`out_folder` | the folder to store intermediate files. One file is created for each sample and contains columns "chr", "pos", "total" and "methylated".
`verbose` | TRUE if progress messages are to be printed

### Value

a BSSeq object.

### Examples

    methy <- system.file("methy_subset.tsv.bgz", package = "NanoMethViz")
    bsseq <- methy_to_bsseq(methy)

[Package NanoMethViz version 1.2.0 Index]