DNAcopyParam {MinimumDistance} | R Documentation

## Constructor for DNAcopyParam class

### Description

Creates an instance of a parameter class for circular binary segmentation of the minimum distance and the log R ratios. Parameters in this object are passed to the `segment` function in the package DNAcopy.

### Usage

    DNAcopyParam(
      alpha = 0.01,
      min.width = 2L,
      undo.splits = c("none", "prune", "sdundo"),
      undo.SD = 3
    )

### Arguments

`alpha` | see `segment`
`min.width` | see `segment`
`undo.splits` | see `segment`
`undo.SD` | see `segment`

### See Also

`segment`

### Examples

    segment_params <- DNAcopyParam(alpha=0.01)
    params <- MinDistParam(dnacopy=segment_params)

[Package MinimumDistance version 1.36.0 Index]