MPSE-accessors {MicrobiotaProcess} | R Documentation

## MPSE accessors

### Description

MPSE accessors

### Usage

    ## S4 method for signature 'MPSE,ANY,ANY,ANY'
    x[i, j, ..., drop = TRUE]

    ## S4 replacement method for signature 'MPSE,DataFrame'
    colData(x, ...) <- value

    ## S4 replacement method for signature 'MPSE,'NULL''
    colData(x, ...) <- value

    otutree(x, ...)

    ## S4 method for signature 'MPSE'
    otutree(x, ...)

    otutree(x, ...) <- value

    ## S4 replacement method for signature 'MPSE,treedata'
    otutree(x, ...) <- value

    ## S4 replacement method for signature 'MPSE,'NULL''
    otutree(x, ...) <- value

    taxatree(x, ...)

    ## S4 method for signature 'MPSE'
    taxatree(x, ...)

    taxatree(x, ...) <- value

    ## S4 replacement method for signature 'MPSE,treedata'
    taxatree(x, ...) <- value

    ## S4 replacement method for signature 'MPSE,'NULL''
    taxatree(x, ...) <- value

    refseq(x, ...)

    ## S4 method for signature 'MPSE'
    refseq(x, ...)

    refseq(x, ...) <- value

    ## S4 replacement method for signature 'MPSE,XStringSet'
    refseq(x, ...) <- value

    ## S4 replacement method for signature 'MPSE,'NULL''
    refseq(x, ...) <- value

    ## S4 replacement method for signature 'MPSE'
    rownames(x) <- value

### Arguments

`x` | MPSE object
`i, j, ...` | Indices specifying elements to extract or replace. Indices are 'numeric' or 'character' vectors or empty (missing) or NULL. Numeric values are coerced to integer as by 'as.integer' (and hence truncated towards zero). Character vectors will be matched to the 'names' of the object (or for matrices/arrays, the 'dimnames')
`drop` | logical If 'TRUE' the result is coerced to the lowest possible dimension (see the examples). This only works for extracting elements, not for the replacement.
`value` | XStringSet object or NULL

[Package MicrobiotaProcess version 1.4.4 Index]