mp_stat_taxa {MicrobiotaProcess} | R Documentation

## Count the number and total number taxa for each sample at different taxonomy levels

### Description

Count the number and total number taxa for each sample at different taxonomy levels

### Usage

    mp_stat_taxa(.data, .abundance, action = "add", ...)

    ## S4 method for signature 'MPSE'
    mp_stat_taxa(.data, .abundance, action = "add", ...)

    ## S4 method for signature 'tbl_mpse'
    mp_stat_taxa(.data, .abundance, action = "add", ...)

    ## S4 method for signature 'grouped_df_mpse'
    mp_stat_taxa(.data, .abundance, action = "add", ...)

### Arguments

`.data` | MPSE or tbl_mpse object
`.abundance` | the column name of abundance to be calculated
`action` | a character "get" returns a table only contained the number and total number for each sample at different taxonomy levels, "only" returns a non-redundant tibble contained a nest column (StatTaxaInfo) and other sample information, "add" returns a update object (.data) contained a nest column (StatTaxaInfo).
`...` | additional parameter

### Value

update object or tbl_df according action argument

### Author(s)

Shuangbin Xu

### Examples

    data(mouse.time.mpse)
    mouse.time.mpse %>%
     mp_stat_taxa(.abundance=Abundance, action="only")

[Package MicrobiotaProcess version 1.4.4 Index]