mp_extract_abundance {MicrobiotaProcess} | R Documentation

## Extracting the abundance metric from MPSE or tbl_mpse object

### Description

Extracting the abundance metric from the MPSE or tbl_mpse, the 'mp_cal_abundance' must have been run with action='add'.

### Usage

    mp_extract_abundance(x, taxa.class = "all", topn = NULL, ...)

    ## S4 method for signature 'MPSE'
    mp_extract_abundance(x, taxa.class = "all", topn = NULL, ...)

    ## S4 method for signature 'tbl_mpse'
    mp_extract_abundance(x, taxa.class = "all", topn = NULL, ...)

    ## S4 method for signature 'grouped_df_mpse'
    mp_extract_abundance(x, taxa.class = "all", topn = NULL, ...)

### Arguments

`x` | MPSE or tbl_mpse object
`taxa.class` | character the name of taxonomy class level what you want to extract
`topn` | integer the number of the top most abundant, default is NULL.
`...` | additional parameters

### Author(s)

Shuangbin Xu

[Package MicrobiotaProcess version 1.4.4 Index]