mp_import_qiime {MicrobiotaProcess} | R Documentation

## Import function to load the output of qiime.

### Description

The function was designed to import the output of qiime and convert them to MPSE class.

### Usage

    mp_import_qiime(
      otufilename,
      mapfilename = NULL,
      otutree = NULL,
      refseq = NULL,
      ...
    )

### Arguments

`otufilename` | character, the file contained otu table, the ouput of qiime.
`mapfilename` | character, the file contained sample information, the tsv format, default is NULL.
`otutree` | treedata, phylo or character, the file contained reference sequences, or treedata object, which is the result by parsing function of treeio, default is NULL.
`refseq` | XStringSet or character, the file contained the tree file or XStringSet, default is NULL.
`...,` | additional parameters.

### Value

MPSE-class.

### Author(s)

Shuangbin Xu

[Package MicrobiotaProcess version 1.4.4 Index]