MPSE {MicrobiotaProcess} | R Documentation

## Construct a MPSE object

### Description

Construct a MPSE object

### Usage

    MPSE(assays, colData, otutree = NULL, taxatree = NULL, refseq = NULL, ...)

### Arguments

`assays` | A 'list' or 'SimpleList' of matrix-like elements All elements of the list must have the same dimensions, we also recommend they have names, e.g. list(Abundance=xx1, RareAbundance=xx2).
`colData` | An optional DataFrame describing the samples.
`otutree` | A treedata object of tidytree package
`taxatree` | A treedata object of tidytree package
`refseq` | A XStingSet object of Biostrings package
`...` | additional parameters, see also the usage of `SummarizedExperiment`.

### Value

MPSE object

[Package MicrobiotaProcess version 1.4.4 Index]