mp_aggregate {MicrobiotaProcess} | R Documentation

## aggregate the assays with the specific group of sample and fun.

### Description

aggregate the assays with the specific group of sample and fun.

### Usage

    mp_aggregate(.data, .abundance, .group, fun = sum, keep_colData = TRUE, ...)

    ## S4 method for signature 'MPSE'
    mp_aggregate(.data, .abundance, .group, fun = sum, keep_colData = TRUE, ...)

### Arguments

`.data` | MPSE object, required
`.abundance` | the column names of abundance, default is Abundance.
`.group` | the column names of sample meta-data, required
`fun` | a function to compute the summary statistics, default is sum.
`keep_colData` | logical whether to keep the sample meta-data with `.group` as row names, default is TRUE.
`...` | additional parameters, see also `aggregate`.

### Value

a new object with .group as column names in assays

### Examples

    ## Not run:
    data(mouse.time.mpse)
    newmpse <- mouse.time.mpse %>%
               mp_aggregate(.group = time)
    newmpse

    ## End(Not run)

[Package MicrobiotaProcess version 1.4.4 Index]