mp_extract_assays {MicrobiotaProcess} | R Documentation

## extract the abundance matrix from MPSE object or tbl_mpse object

### Description

extract the abundance matrix from MPSE object or tbl_mpse object

### Usage

    mp_extract_assays(x, .abundance, byRow = TRUE, ...)

    ## S4 method for signature 'MPSE'
    mp_extract_assays(x, .abundance, byRow = TRUE, ...)

    ## S4 method for signature 'tbl_mpse'
    mp_extract_assays(x, .abundance, byRow = TRUE, ...)

    ## S4 method for signature 'grouped_df_mpse'
    mp_extract_assays(x, .abundance, byRow = TRUE, ...)

### Arguments

`x` | MPSE or tbl_mpse object
`.abundance` | the name of abundance to be extracted.
`byRow` | logical if it is set TRUE, 'otu X sample' shape will return, else 'sample X otu' will return.
`...` | additional parameters.

### Value

otu abundance a data.frame object

[Package MicrobiotaProcess version 1.4.4 Index]