Package: MethCP
Type: Package
Title: Differential methylation anlsysis for bisulfite sequencing data
Version: 1.6.0
Description: MethCP is a differentially methylated region 
    (DMR) detecting method for whole-genome bisulfite sequencing (WGBS) 
    data, which is applicable for a wide range of experimental designs 
    beyond the two-group comparisons, such as time-course data. 
    MethCP identifies DMRs based on change point detection, which 
    naturally segments the genome and provides region-level 
    differential analysis.
License: Artistic-2.0
Encoding: UTF-8
RoxygenNote: 7.1.1
biocViews: DifferentialMethylation, Sequencing, WholeGenome, TimeCourse
Imports: methods, utils, stats, S4Vectors, bsseq, DSS, methylKit,
        DNAcopy, GenomicRanges, IRanges, GenomeInfoDb, BiocParallel
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
Depends: R (>= 3.6.0)
Authors@R: person("Boying", "Gong", email = "jorothy_gong@berkeley.edu",
    role = c("aut", "cre"))
BugReports: https://github.com/boyinggong/methcp/issues
git_url: https://git.bioconductor.org/packages/MethCP
git_branch: RELEASE_3_13
git_last_commit: 4b722d1
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-20 01:05:37 UTC; biocbuild
Author: Boying Gong [aut, cre]
Maintainer: Boying Gong <jorothy_gong@berkeley.edu>
Built: R 4.1.0; ; 2021-05-20 08:54:57 UTC; windows
