MS_reactionNetwork {MetaboSignal} | R Documentation

## Build reaction-compound network

### Description

This function generates a directed reaction-compound network. The network is formalized as a three-column matrix, where each row represents an edge connecting two nodes (from source to target).

### Usage

    MS_reactionNetwork(metabo_paths)

### Arguments

`metabo_paths` | character vector containing the KEGG IDs of the metabolic pathways of interest. See functions "MS_keggFinder( )" and "MS_getPathIds( )".

### Value

A three-column matrix where each row represents an edge between two nodes.

### Note

Reaction directionality reported in KEGG has been cross-validated with published literature (Duarte et al., 2007).

### Examples

    reaction_network <- MS_reactionNetwork(metabo_paths = c("rno00010", "rno00562"))

[Package MetaboSignal version 1.22.0 Index]