Package: MetCirc
Type: Package
Title: Navigating mass spectral similarity in high-resolution MS/MS
        metabolomics data
Version: 1.22.0
Date: 2020-07-04
Authors@R: c(person(given = "Thomas", family = "Naake",
    email = "thomasnaake@googlemail.com",
    role = c("aut","cre")),
  person(given = "Johannes", family = "Rainer",
    email = "johannes.rainer@eurac.edu",
    role = "ctb"),
  person(given = "Emmanuel", family = "Gaquerel",
    email = "emmanuel.gaquerel@ibmp-cnrs.unistra.fr", role = "aut"))
Author: Thomas Naake <thomasnaake@googlemail.com>, 
    Johannes Rainer <johannes.rainer@eurac.edu> and Emmanuel Gaquerel
    <emmanuel.gaquerel@ibmp-cnrs.unistra.fr>
Maintainer: Thomas Naake <thomasnaake@googlemail.com>
VignetteBuilder: knitr
Depends: R (>= 3.5), amap (>= 0.8), circlize (>= 0.3.9), scales (>=
        0.3.0), shiny (>= 1.0.0), MSnbase (>= 2.15.3),
Imports: ggplot2 (>= 3.2.1), S4Vectors (>= 0.22.0)
Suggests: BiocGenerics, graphics (>= 3.5), grDevices (>= 3.5), knitr
        (>= 1.11), methods (>= 3.5), stats (>= 3.5), testthat (>=
        2.2.1)
biocViews: ImmunoOncology, Metabolomics, MassSpectrometry,
        Visualization
Description: MetCirc comprises a workflow to interactively explore 
  high-resolution MS/MS metabolomics data. MetCirc uses the Spectrum2 and 
  MSpectra infrastructure defined in the package MSnbase that stores 
  MS/MS spectra. MetCirc offers functionality to calculate 
  similarity between precursors based on the normalised dot product, neutral
  losses or user-defined functions and 
  visualise similarities in a circular layout. Within the interactive framework
  the user can annotate MS/MS features based on their similarity to 
  (known) related MS/MS features. 
License: GPL (>= 3)
RoxygenNote: 7.1.0
git_url: https://git.bioconductor.org/packages/MetCirc
git_branch: RELEASE_3_13
git_last_commit: ff94e6d
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-20 01:02:08 UTC; biocbuild
Built: R 4.1.0; ; 2021-05-20 08:54:51 UTC; windows
