.makeProfilePlot {MSstats} | R Documentation

## Create profile plot

### Description

Create profile plot

### Usage

    .makeProfilePlot(
      input,
      is_censored,
      featureName,
      y.limdown,
      y.limup,
      x.axis.size,
      y.axis.size,
      text.size,
      text.angle,
      legend.size,
      dot.size.profile,
      ss,
      s,
      cumGroupAxis,
      yaxis.name,
      lineNameAxis,
      groupNametemp,
      dot_colors
    )

### Arguments

`input` | data.table
`is_censored` | TRUE if censored values were imputed
`featureName` | for "ProfilePlot" only, "Transition" (default) means printing feature legend in transition-level; "Peptide" means printing feature legend in peptide-level; "NA" means no feature legend printing.
`x.axis.size` | size of x-axis labeling for "Run" in Profile Plot and QC Plot, and "Condition" in Condition Plot. Default is 10.
`y.axis.size` | size of y-axis labels. Default is 10.
`text.size` | size of labels represented each condition at the top of graph in Profile Plot and QC plot. Default is 4.
`text.angle` | angle of labels represented each condition at the top of graph in Profile Plot and QC plot or x-axis labeling in Condition plot. Default is 0.
`legend.size` | size of feature legend (transition-level or peptide-level) above graph in Profile Plot. Default is 7.
`dot.size.profile` | size of dots in profile plot. Default is 2.

[Package MSstats version 4.0.1 Index]