input.pd {MSstatsTMT} | R Documentation

## Example of output from PDtoMSstatsTMTFormat function

### Description

It is made from `raw.pd` and `annotation.pd`, which is the output of PDtoMSstatsTMTFormat function. It should include the required columns as below.

### Usage

    input.pd

### Format

A data frame with 20110 rows and 11 variables.

### Details

- ProteinName : Protein ID

- PeptideSequence : peptide sequence

- Charge : peptide charge

- PSM : peptide ion and spectra match

- Channel : Labeling information (126, ... 131)

- Condition : Condition (ex. Healthy, Cancer, Time0)

- BioReplicate : Unique ID for biological subject.

- Run : MS run ID

- Mixture : Unique ID for TMT mixture.

- TechRepMixture : Unique ID for technical replicate of one TMT mixture.

- Intensity: Protein Abundance

### Examples

    head(input.pd)

[Package MSstatsTMT version 2.0.1 Index]