quant.pd.msstats {MSstatsTMT} | R Documentation

## Example of output from proteinSummarizaiton function

### Description

It is made from `input.pd`. It is the output of proteinSummarization function. It is a list that consists of two data.frames with feature-level (FeatureLevelData) and protein-level data (ProteinLevelData). ProteinLevelData should include the required columns as below.

### Usage

    quant.pd.msstats

### Format

A data frame with 100 rows and 8 variables.

### Details

- Run : MS run ID

- Protein : Protein ID

- Abundance: Protein-level summarized abundance

- Channel : Labeling information (126, ... 131)

- Condition : Condition (ex. Healthy, Cancer, Time0)

- BioReplicate : Unique ID for biological subject.

- TechRepMixture : Unique ID for technical replicate of one TMT mixture.

- Mixture : Unique ID for TMT mixture.

### Examples

    head(quant.pd.msstats$ProteinLevelData)

[Package MSstatsTMT version 2.0.1 Index]