quant.msstats.ptm {MSstatsTMTPTM} | R Documentation

## Example of output from proteinSummarizaiton function for PTM data

### Description

It is made from `raw.ptm`. It is the output of proteinSummarization function from MSstatsTMT. It should include the required columns as below. The variables are as follows:

### Usage

    quant.msstats.ptm

### Format

A data frame with 19205 rows and 8 variables.

### Details

- Run : MS run ID

- Protein : Protein ID with modification site mapped in. Ex. Protein_1002_S836

- Abundance: Protein-level summarized abundance

- Channel : Labeling information (126, ... 131)

- Condition : Condition (ex. Healthy, Cancer, Time0)

- BioReplicate : Unique ID for biological subject.

- TechRepMixture : Unique ID for technical replicate of one TMT mixture.

- Mixture : Unique ID for TMT mixture.

### Examples

    head(quant.msstats.ptm)

[Package MSstatsTMTPTM version 1.1.2 Index]