PlotiRTScore {MQmetrics} | R Documentation

## Score vs retention time of the iRT peptides

### Description

Score vs retention time of the iRT peptides

### Usage

    PlotiRTScore(MQCombined, tolerance = 0.001)

### Arguments

`MQCombined` | Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`tolerance` | Error maximum to find the iRT peptides by m/z value. by default is 0.001.

### Value

A plot for each sample showing a linear regression of the iRT peptides' retention time vs the score.

### Examples

    MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
    MQCombined <- make_MQCombined(MQPathCombined)
    PlotiRT(MQCombined)

[Package MQmetrics version 1.0.0 Index]