PlotProteinPeptideRatio {MQmetrics} | R Documentation

## Identification Ratio Between Peptides and Proteins

### Description

Identification Ratio Between Peptides and Proteins

### Usage

    PlotProteinPeptideRatio(
      MQCombined,
      intensity_type = "Intensity",
      long_names = FALSE,
      sep_names = NULL
    )

### Arguments

`MQCombined` | Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`intensity_type` | The type of intensity of interest. Values: 'Intensity' or 'LFQ'. Default = 'Intensity'.
`long_names` | If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE.
`sep_names` | If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL.

### Value

Returns one plot showing the proteins identified vs the peptide/protein ratio in each experiment.

### Examples

    MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
    MQCombined <- make_MQCombined(MQPathCombined)
    PlotProteinPeptideRatio(MQCombined)

[Package MQmetrics version 1.0.0 Index]