PlotHydrophobicity {MQmetrics} | R Documentation

## Peptide hydrophobicity by GRAVY score

### Description

Peptide hydrophobicity by GRAVY score

### Usage

    PlotHydrophobicity(
      MQCombined,
      show_median = TRUE,
      size_median = 1.5,
      binwidth = 0.2,
      palette = "Set2",
      plots_per_page = 5
    )

### Arguments

`MQCombined` | Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`show_median` | If true it will show the median of each group, as a red dashed line.By default is TRUE.
`size_median` | The width of the median line in the plots.
`binwidth` | Selects the binwidth of the histogram. By default = 0.2
`palette` | The palette from the Package RColorBrewer. By default is 'Set2'.
`plots_per_page` | Establish the maximum number of plots per page.

### Value

Returns a histogram per sample, showing the frequency of the peptide's hydrophobicity GRAVY value.

### Examples

    MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
    MQCombined <- make_MQCombined(MQPathCombined)
    PlotHydrophobicity(MQCombined)

[Package MQmetrics version 1.0.0 Index]