ReportTables {MQmetrics} | R Documentation

## Report Tables with summary data

### Description

Report Tables with summary data

### Usage

    ReportTables(
      MQCombined,
      long_names = FALSE,
      sep_names = NULL,
      log_base = 2,
      intensity_type = "Intensity"
    )

### Arguments

`MQCombined` | The directory to the "combined" folder where the MaxQuant results are stored.
`long_names` | If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE.
`sep_names` | If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL.
`log_base` | The logarithmic scale for the intensity. Default is 2.
`intensity_type` | The type of intensity. Values: 'Intensity' or 'LFQ'.

### Value

A list with four tables are generated: - Protein Information - Intensity Information - Peptide Charge Information - Peptide hydrophobicity Information

### Examples

    MQPathCombined <- system.file('extdata/combined/', package = 'MQmetrics')
    MQCombined <- make_MQCombined(MQPathCombined)
    ReportTables(MQCombined)

[Package MQmetrics version 1.0.0 Index]