make_MQCombined {MQmetrics} | R Documentation

## Read MaxQuant Tables From Directory

### Description

Read MaxQuant Tables From Directory

### Usage

    make_MQCombined(MQPathCombined, remove_contaminants = TRUE)

### Arguments

`MQPathCombined` | The directory to the "combined" folder where the MaxQuant results are stored.
`remove_contaminants` | Whether or not to remove contaminants, reverse and identified by one one peptide.

### Value

The files from the MaxQuant with the contaminants and Reverse hits removed.

### Examples

    MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
    MQCombined <- make_MQCombined(MQPathCombined)

[Package MQmetrics version 1.0.0 Index]