PlotAcquisitionCycle {MQmetrics} | R Documentation

## Acquisition Cycle and MS/MS

### Description

Acquisition Cycle and MS/MS

### Usage

    PlotAcquisitionCycle(MQCombined, palette = "Set2", plots_per_page = 5)

### Arguments

`MQCombined` | Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`palette` | The palette from the Package RColorBrewer. By default is 'Set2'.
`plots_per_page` | Establish the maximum number of plots per page.

### Value

Two plots per sample, one with the cycle tyme vs retention time, and MS/MS count vs retention time.

### Examples

    MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
    MQCombined <- make_MQCombined(MQPathCombined)
    PlotAcquisitionCycle(MQCombined)

[Package MQmetrics version 1.0.0 Index]