PlotProteinCoverage {MQmetrics} | R Documentation

## Protein coverage and degradation.

### Description

Protein coverage and degradation.

### Usage

    PlotProteinCoverage(
      MQCombined,
      UniprotID = NULL,
      log_base = 2,
      segment_width = 1,
      palette = "Set2",
      plots_per_page = 5
    )

### Arguments

`MQCombined` | Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`UniprotID` | Uniprot ID of the protein of interest.
`log_base` | The logarithmic scale for the intensity. Default is 2.
`segment_width` | Width of the segments to improve visualization. Default is 1.
`palette` | The palette from the Package RColorBrewer. By default is 'Set2'.
`plots_per_page` | Establish the maximum number of plots per page.

### Value

Two plots for each sample, the end position vs the start position of each peptide of the given protein found. And the Intensity of a given peptide and its length.

### Examples

    MQPathCombined <- system.file('extdata/combined/', package = 'MQmetrics')
    MQCombined <- make_MQCombined(MQPathCombined)
    PlotProteinCoverage(MQCombined, UniprotID = 'Q8R0Y6')

[Package MQmetrics version 1.0.0 Index]