plotEvents {MOMA} | R Documentation

## Plot barchart of genomic events

### Description

Plot barchart of genomic events

### Usage

    plotEvents(
      summary.vec,
      highlight.genes = NULL,
      genomeBand_2_gene = NULL,
      samples.total,
      max.muts = 10,
      max.cnv = 5
    )

### Arguments

`summary.vec` | : named vector of the counts, named 'Event name':'Type' where type is 'mut', 'amp', 'del', 'fus'. Mutations are in Entrez ID Amp/Deletion CNV events are in genomic band location
`highlight.genes` | : well known genes to highlight in the analysis in
`genomeBand_2_gene` | : mapping of genomic location IDs to gene name: vector of HUGO gene ids, named by genomic loci
`samples.total` | : number of samples in the subtype, used to calculate percentages
`max.muts` | : maximum number of mutations to get per sample, default is 10
`max.cnv` | : maximum number of cnvs to per sample, default is 5

### Value

plot object

[Package MOMA version 1.4.0 Index]