getCoverage {MOMA} | R Documentation

## Get coverage of interactions

### Description

Get coverage of interactions

### Usage

    getCoverage(
      MomaObject,
      cMR.ranking,
      viper.samples,
      topN = 100,
      mutation.filter = NULL,
      verbose = FALSE
    )

### Arguments

`MomaObject` | A numeric vector with cluster membership, names are samples
`cMR.ranking` | A vector entrez IDs, in order
`viper.samples` | Calculate the genomic coverage only for these sample
`topN` | Compute coverage for only the top -N- Master Regulators
`mutation.filter` | Retain only mutation events in this (positive) list

### Value

A list of lists, indexed by sample name, with coverage statistics for each sample

[Package MOMA version 1.4.0 Index]