cnvScoreStouffer {MOMA} | R Documentation

## Integrate CNV scores

### Description

Integrate CNV scores

### Usage

    cnvScoreStouffer(
      mapping,
      diggit.interactions,
      cytoband = TRUE,
      from.p = FALSE,
      pos.nes.only = TRUE
    )

### Arguments

`mapping` | a named vector of genomic locations/cytoband IDs. names are the gene names for each–i.e. a many to one mapping from HUGO or entrez IDs to cytoband location
`diggit.interactions` | list indexed by MR/TF name in Entrez Space each points to a named vector of NES / z-scores associated with entrez IDs for each interacting event.
`cytoband` | Boolean to use cytoband locations for computing final integrated score
`from.p` | Boolean, set TRUE if diggit.interaction values are p-values instead of z-scores
`pos.nes.only` | Boolean, only consider positive DIGGIT association scores when ranking candidate MRs (default=TRUE)

### Value

A vector of z-scores, named by the Master Regulators in 'diggit.interactions'

[Package MOMA version 1.4.0 Index]