associateEvents {MOMA} | R Documentation

## Use 'aREA' to calculate the enrichment between each genomic event - VIPER inferred protein pair.

### Description

Requires pre-computed VIPER scores and a binary events matrix. Will use only samples in both event and VIPER matrices.

### Usage

    associateEvents(
      vipermat,
      events.mat,
      min.events = NA,
      whitelist = NA,
      event.type = c("Amplifications", "Deletions", "Mutations", "Fusions", NA),
      verbose
    )

### Arguments

`vipermat` | Pre-computed VIPER scores with samples as columns and proteins as rows
`events.mat` | Binary 0/1 events matrix with samples as columns and genes or events as rows
`min.events` | Only compute enrichment if the number of samples with these events is GTE to this
`whitelist` | Only compute associations for events in this list
`event.type` | Name of the event type being analyzed
`verbose` | whether to print extra progress statements

### Value

A matrix of aREA scores, dimensions are nrow(events.mat) x nrow(vipermat)

[Package MOMA version 1.4.0 Index]