makeSaturationPlots {MOMA} | R Documentation

## Main function to generate the summary plots of the analysis

### Description

Main function to generate the summary plots of the analysis

### Usage

    makeSaturationPlots(
      momaObj,
      clustering.solution = NULL,
      important.genes = NULL,
      fCNV = NULL,
      max.events = 30
    )

### Arguments

`momaObj` | : momaObj that has already run the saturationCalculation function
`clustering.solution` | : clustering vector with sample names and cluster designations
`important.genes` | : vector of gene names to prioritize when plotting. Can be general genes of interest, oncogenes, tumor supressors etc
`fCNV` | : vector of confirmed functional CNVs if calculated. Will filter for only those CNVs
`max.events` | : maximum number of events to plot for the oncoplots

### Value

object with both types of summary plot for each subtype

### Examples

    ## Not run:
    makeSaturationPlots(momaObj, max.events = 20)

    ## End(Not run)

[Package MOMA version 1.4.0 Index]