mm9-Genes {MMDiff2} | R Documentation

## mm9-Genes

### Description

Subset of Genes from the mm9 annotation that overlap with example Peaks in the Cfp1-Peaks file.

### Usage

    data('mm9-Genes')

### Format

contains, GR a GRanges object with 800 ranges

### Examples

    # data was created as follows:
    ## Not run:
    data('Cfp1-Peaks')
    library(TxDb.Mmusculus.UCSC.mm9.knownGene)
    txdb <- TxDb.Mmusculus.UCSC.mm9.knownGene #shorthand (for convenience) txdb
    GR <- transcripts(txdb)
    ov <- findOverlaps(GR,Peaks)
    GR <- GR[queryHits(ov)]
    save(file = 'data/mm9-Genes.rData',GR)

    ## End(Not run)

[Package MMDiff2 version 1.20.0 Index]