runDMRcate {MEAL} | R Documentation

## Run DMRcate

### Description

Run DMRcate

### Usage

    runDMRcate(set, model, coefficient = 2, resultSet = FALSE, ...)

### Arguments

`set` | `GenomicRatioSet`, `eSet` derived object or `SummarizedExperiment`
`model` | Model matrix or formula to get model matrix from `set`.
`coefficient` | Numeric with the column of model matrix used in the analysis. (Default: 2)
`resultSet` | Should results be encapsulated in a `resultSet`? (Default: TRUE)
`...` | Further arguments passed to `cpg.annotate` or `dmrcate`.

### Details

This function has been deprecated and will be defunct in the new version.

### Value

data.frame or `resultSet` with the result of `bumphunter`

### See Also

`dmrcate`, `cpg.annotate`

[Package MEAL version 1.22.0 Index]