ViolinView {MAGeCKFlute} | R Documentation

## Violin plot

### Description

Plots the violin of beta scores in Control and Treatment samples.

### Usage

    ViolinView(
      beta,
      samples = NULL,
      main = NULL,
      ylab = "Beta Score",
      filename = NULL,
      width = 5,
      height = 4,
      ...
    )

### Arguments

`beta` | Data frame, , including `samples` as columns.
`samples` | Character, specifying the name of samples to be compared.
`main` | As in 'plot'.
`ylab` | As in 'plot'.
`filename` | Figure file name to create on disk. Default filename="NULL", which means don't save the figure on disk.
`width` | As in ggsave.
`height` | As in ggsave.
`...` | Other available parameters in function 'ggsave'.

### Value

An object created by `ggplot`, which can be assigned and further customized.

### Author(s)

Wubing Zhang

### See Also

`DensityView`

### Examples

    file3 = file.path(system.file("extdata", package = "MAGeCKFlute"),
    "testdata/mle.gene_summary.txt")
    dd = ReadBeta(file3)
    ViolinView(dd, samples=c("dmso", "plx"))
    #or
    ViolinView(dd[, c("dmso", "plx")])

[Package MAGeCKFlute version 1.12.0 Index]