OmitCommonEssential {MAGeCKFlute} | R Documentation

## Omit common essential genes based on depmap data

### Description

Omit common essential genes based on depmap data

### Usage

    OmitCommonEssential(dd, symbol = "id", lineages = "All", dependency = -0.5)

### Arguments

`dd` | A data frame.
`symbol` | A character, specifying the column name of gene symbols in the data frame.
`lineages` | A character vector, specifying the lineages used for common essential gene selection.
`dependency` | A numeric, specifying the threshold for common essential gene selection.

### Value

A data frame.

### Author(s)

Wubing Zhang

### Examples

    file1 = file.path(system.file("extdata", package = "MAGeCKFlute"),
    "testdata/rra.gene_summary.txt")
    gdata = ReadRRA(file1)
    dim(gdata)
    ## Not run:
      rra.omit = OmitCommonEssential(gdata)
      dim(rra.omit)

    ## End(Not run)

[Package MAGeCKFlute version 1.12.0 Index]