IncorporateDepmap {MAGeCKFlute} | R Documentation

## Incorporate Depmap screen into analysis

### Description

Incorporate Depmap screen into analysis

### Usage

    IncorporateDepmap(
      dd,
      symbol = "id",
      cell_lines = NA,
      lineages = "All",
      na.rm = FALSE
    )

### Arguments

`dd` | A data frame.
`symbol` | A character, specifying the column name of gene symbols in the data frame.
`cell_lines` | A character vector, specifying the cell lines in Depmap to be considered.
`lineages` | A character vector, specifying the lineages in Depmap to be considered.
`na.rm` | Boolean, indicating whether removing NAs from the results.

### Value

A data frame with Depmap column attached.

### Author(s)

Wubing Zhang

### Examples

    file1 = file.path(system.file("extdata", package = "MAGeCKFlute"),
    "testdata/rra.gene_summary.txt")
    gdata = ReadRRA(file1)
    head(gdata)
    ## Not run:
      gdata = IncorporateDepmap(gdata)
      head(gdata)

    ## End(Not run)

[Package MAGeCKFlute version 1.12.0 Index]