qtlManhattanPlot {MAGAR} | R Documentation

## qtlManhattanPlot

### Description

This function creates a manhattan plot for the given methQTL result

### Usage

    qtlManhattanPlot(meth.qtl.result, type = "CpG", stat = "p.val.adj.fdr")

### Arguments

`meth.qtl.result` | An object of type `MethQTLResult-class` containing the methQTL
`type` | Determines if either the CpG (default) or the SNP is to be visualized
`stat` | Determines the statistic that is to be visualized. Can be either `P.value`, `Beta` or `p.val.adj.fdr`

### Details

A plot is shown that contains chromosome-wise interactions.

### Value

None

### Author(s)

Michael Scherer

### Examples

    meth.qtl.res <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR"))
    qtlManhattanPlot(meth.qtl.res)

[Package MAGAR version 1.0.1 Index]