MethQTLResult-class {MAGAR} | R Documentation

## MethQTLResult-class

### Description

Class storing methQTL analysis results and the associated genomic annotations

### Details

This class stores the results of the methQTL analysis. It stores a `data.frame` with the methQTL results, and associated genomic annotations for both the methylation sites and SNPs.

### Slots

`result.frame`

  The methQTL results as a `data.frame`

`anno.meth`

  Genomic annotation of the methylation sites as a `data.frame`.

`anno.geno`

  Genomic annotation of the SNPs as a `data.frame`.

`correlation.blocks`

  Correlation blocks determined from the methylation matrix.

`method`

  The method used to call methQTL.

`rep.type`

  Method used to determine representative CpGs from correlation blocks.

`chr`

  Optional argument specifying if methQTL were called on a single chromosome.

### Methods

`getResult`

  Returns the methQTL results.

`getAnno`

  Returns the genomic annotation.

### Author(s)

Michael Scherer

[Package MAGAR version 1.0.1 Index]