qtlDistanceScatterplot {MAGAR} | R Documentation

## qtlDistanceScatterplot

### Description

Computes a scatterplot between CpG-SNP distance with both effect size and p-value

### Usage

    qtlDistanceScatterplot(meth.qtl.result, out.dir = NULL, out.name = NULL)

### Arguments

`meth.qtl.result` | An object of type `MethQTLResult-class` containing called methQTL
`out.dir` | If specified, the plot is stored as a pdf in this directory
`out.name` | Optional name for the resulting plot

### Value

An object of type `ggplot` comparing the distance between CpG and SNP. Negative values indicate that the SNP is downstream of the CpG.

### Author(s)

Michael Scherer

### Examples

    meth.qtl.res <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR"))
    qtlDistanceScatterplot(meth.qtl.res)

[Package MAGAR version 1.0.1 Index]