MACSQuant {MACSQuantifyR} | R Documentation

## The MACSQuant Class

### Description

MACSQuant object contains all the data and the user parameters

### Slots

`my_data`

  Contains the raw data

`my_data_sorted`

  Contains the sorted data (according to replicates order)

`my_replicates_sorted`

  Contains the sorted matrix containing replicates names

`experiment_name`

  Contains the experiment name given by the user

`statistics`

  Contains the statistics for each condition

`combination.index.df`

  data.frame that contains the outputs of the combination_index function

`param.experiment`

  list that contains the parameters relative to the experiment (i.e, number of replicates, number of conditions...)

`param.output`

  List that contains the parameters relative to the report generation and outputs (i.e, save intermediary results, generate full report..)

[Package MACSQuantifyR version 1.6.0 Index]