GetGOS_ALL {IntramiRExploreR} | R Documentation

## Gene ontology for Target Genes.

### Description

Gene ontology for Target Genes.

### Usage

    GetGOS_ALL(gene, GO = c("DAVID", "topGO"), term = c("GOTERM_BP_ALL",
      "GOTERM_MF_ALL", "GOTERM_CC_ALL"), geneIdType = "ALIAS", email,
      path = tempdir(), ontology = c("GO_BP", "GO_MF", "GO_CC"), filename)

### Arguments

`gene` | List A String or vector containing the Gene names.
`GO` | A String depicting the chosen GO tool. Choices are "David" and "topGO"
`term` | A String depicting the chosen term. Choices are "GOTERM_BP_ALL","GOTERM_MF_ALL", "GOTERM_CC_ALL".
`geneIdType` | Type of gene Id given as input. Default "ALIAS"
`email` | Email Id to connect to David.
`path` | String. The path where the data is stored if TEXT=TRUE.
`ontology` | Ontology selection for topGO. Choices are "GO_BP","GO_MF","GO_CC".
`filename` | Name of the file to store Gene Ontology.

### Value

Depending upon the ouput choice data is stored in the path specified. Default option prints output to the console.

### Examples

    ## Not run:
    miR="dme-miR-12"
    a<-Visualisation(miR,mRNA_type=c("GeneSymbol"),method=c("Both"),
       platform=c("Affy1"),thresh=100)
    genes<-a$Target_GeneSymbol
    GetGOS_ALL(genes,GO=c("topGO"),term=c("GO_BP"),path=tempdir(),
         filename="test")

    ## End(Not run)

[Package IntramiRExploreR version 1.14.1 Index]