InTADSig {InTAD} | R Documentation

## The InTADSig Class

### Description

The InTADSig object stores signals and gene expression data for the samples.

### Details

It uses MultiAssayExperiment object to store information. Key slots to access are listed below.

### Slots

`sigMAE`:

  `"MultiAssayExperiment"`, MultiAssayExperiment object containg signals and gene counts

`signalConnections`:

  `"list"`, The list of signals representing gene data frames in the same TAD

`loopsDf`:

  `"data.frame"`, The data.frame containing details of provided input loops

`loopConnections`:

  `"list"`, The list of connections between signals and genes via loops

`ncore`:

  `"numeric"`, Number of cores to use for parallel computing

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[Package InTAD version 1.12.0 Index]