fnSE {InTAD} | R Documentation

## Preparation for correlation analysis for a signal

### Description

This function collects all genes for signal genomic region inside of Topologically Associated Domains (TADs)

### Usage

    fnSE(id, sigList, tadGR, tss, pickMaxOvlp, nearestTad)

### Arguments

`id` | Id of signal from the list
`sigList` | List of signal GRs and their names
`tadGR` | TAD genomic regions
`tss` | Gene transcription start sites
`pickMaxOvlp` | Use TAD with max overlap
`nearestTad` | The table listing TADs nearest to each TSS #'

### Details

The signal is checked if it is lying inside of TAD. Then all genes in this TAD are collected.

### Value

Data.frame containing genes connected to signal

[Package InTAD version 1.12.0 Index]