findCorFromLoops {InTAD} | R Documentation

## Function to perfrom correlation analysis via loops.

### Description

This function combines genes and signals using obtained loop connections.

### Usage

    findCorFromLoops(object, method = "pearson", adj.pval = FALSE)

### Arguments

`object` | InTADSig object with signals and genes combined via loops
`method` | Correlation method: "pearson" (default), "kendall", "spearman"
`adj.pval` | Perform p-value adjsutment and include q-values in result

### Value

A table with correlation values for signal-gene pairs including correlation p-value and euclidian distance.

[Package InTAD version 1.12.0 Index]