.IDConvert              convert ID convert ID
.RunGO                  RunGO RunGO
.RunKEGG                RunKEGG RunKEGG
.generateNetObject      GenerateNetObject Generate Net Object for the
                        network use.
.getBlock               getblock function
.runBiclusterBaseOnDiscretization
                        Run Discretization Generate temporal
                        discretized file
.runBiclusterBaseOnLTMG
                        RunBicusterBaseOnLTMG
.separateBic            separateBic separate biclusters
AddMeta                 AddMeta
BIC_LTMG                BIC_LTMG BIC_LTMG
BIC_ZIMG                BIC_ZIMG fits different model BIC_ZIMG fits
                        different model
CLUSTERING              Packaging clustering method This function is
                        used for choosing clustering method
CalBinaryMultiSignal    CalBinaryMultiSignal
CalBinarySingleSignal   CalBinarySingleSignal
CreateIRISFGMObject     CreateIRISFGMObject
DimReduce-class         Create DimReduce object
DotPlotPathway          DotPlotPathway
FindClassBasedOnMC      FindClassBasedOnMC
FindGlobalMarkers       FindGlobalMarkers
FindMarker              FindMarker
Fit_LTMG                Fit_LTMG Fit_LTMG
GRAPH                   generate graph
GetBinaryMultiSignal    GetBinaryMultiSignal
GetBinarySingleSignal   GetBinarySingleSignal
GetLTMGmatrix           GetLTMGmatrix
Global_Zcut             Global_Zcut create Zcut Global_Zcut create Zcut
IRISFGM-class           IRISFGM
InverseMillsRatio       Title Title
KS_LTMG                 KS_LTMG KS_LTMG
KS_ZIMG                 KS_ZIMG KS_ZIMG
LTMG                    LTMG LTMG
LogSeparateKRpkmNew     Title Title
LogSeparateKRpkmNewLR   LogSeparateKRpkmNewLR
MCL                     MCL clustering MCL clustering
MINUS                   MINUS MINUS
MIN_return              MIN_return MIN_return
Pi_Zj_Zcut_new          Pi_Zj_Zcut_new Pi_Zj_Zcut_new
PlotDimension           PlotDimension
PlotHeatmap             PlotHeatmap
PlotMarkerHeatmap       PlotMarkerHeatmap will visualize global marker
                        This function will generate global marker gene
                        heatmap
PlotMeta                PlotMeta
PlotModuleNetwork       PlotModuleNetwork
PlotNetwork             PlotNetwork
ProcessData             ProcessData
Pure_CDF                Pure_CDF Pure_CDF
ReadFrom10X_folder      ReadFrom10X_folder
ReadFrom10X_h5          ReadFrom10X_h5
RunBicluster            RunBicluster
RunClassification       RunClassification
RunDimensionReduction   RunDimensionReduction
RunDiscretization       RunDiscretization
RunLTMG                 RunLTMG
RunPathway              RunPathway
SC                      spectral Clustering method spectral Clustering
                        method
SeparateKRpkmNew        SeparateKRpkmNew SeparateKRpkmNew
SeparateKRpkmNew2       SeparateKRpkmNew2 SeparateKRpkmNew2
SeparateKRpkmNewLR      SeparateKRpkmNewLRPlus Calcuate the LTMG_2LR
                        for some genes Calcuate the LTMG_2LR for some
                        genes
SeparateKRpkmNewLRPlus
                        SeparateKRpkmNewLRPlus Calcuate the LTMG_2LR
                        for some genes Calcuate the LTMG_2LR for some
                        genes
SeparateKRpkmNewp       Title Title
State_return            State_return State_return
SubsetData              SubsetData
example_object          Example object.
getMeta                 getMeta
qubic                   qubic
