PlotNetwork {IRISFGM} | R Documentation

## PlotNetwork

### Description

PlotNetwork

PlotNetwork This function is to plot the network for selected biclusters to show the genes (or cells) overlapping relations.

### Usage

    PlotNetwork(object, ...)

    ## S4 method for signature 'IRISFGM'
    PlotNetwork(
      object,
      edge.by = "gene",
      lay.out = "linear",
      N.bicluster = seq_len(20)
    )

### Arguments

`object` | Input IRIS-FGM object.
`...` | other arguments passed to methods
`edge.by` | Should be "cell" or by "gene," indicating nodes label. The default value is by "gene."
`lay.out` | Should be one type of layouts to show nodes' arrangement, including 'linear'(default), 'star', 'circle', 'gem', 'dh', 'graphopt', 'grid', 'mds', 'randomly', 'fr', 'kk', 'drl', 'lgl'.
`N.bicluster` | Should be two integers indicating the number of two biclusters.

### Value

It will generate a global network regarding overlapping genes or cells.

### Examples

    data(example_object)
    PlotNetwork(example_object,
    N.bicluster =c(1:20))

[Package IRISFGM version 1.0.0 Index]