PlotMarkerHeatmap {IRISFGM} | R Documentation

## PlotMarkerHeatmap will visualize global marker This function will generate global marker gene heatmap

### Description

PlotMarkerHeatmap will visualize global marker This function will generate global marker gene heatmap

### Usage

    PlotMarkerHeatmap(
      Globalmarkers = NULL,
      object = NULL,
      idents = NULL,
      top.gene = 50,
      p.adj = 0.05,
      scale = "row",
      label.size = 1
    )

### Arguments

`Globalmarkers` | output from FindGlobalMarkers
`object` | input IRISFGM object
`idents` | set current idents
`top.gene` | this number of genes will be used for generating heatmap
`p.adj` | adjusted pvalue cutoff for gene selection threshold
`scale` | character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. The default is "row" if symm false, and "none" otherwise.
`label.size` | Number to decide label size

### Value

heatmap

### Examples

    data("example_object")
    markers <- FindGlobalMarkers(
    object = example_object,
    idents = "Seurat_r_0.8_k_20")

    PlotMarkerHeatmap(
    Globalmarkers = markers,
    object = example_object,
    idents = "Seurat_r_0.8_k_20")

[Package IRISFGM version 1.0.0 Index]