plotReadCategoryQuals {IONiseR} | R Documentation

## Visualise the mean base quality of each read

### Description

Generates a box plot showing the mean base quality for each read, broken down into the three categories of read type that can be found in a fast5 file.

### Usage

    plotReadCategoryQuals(summaryData)

### Arguments

`summaryData` | Object of class Fast5Summary.

### Value

Returns an object of class `gg` representing the plot.

### Examples

    if( require(minionSummaryData) ) {
       data(s.typhi.rep2, package = 'minionSummaryData')
       plotReadCategoryQuals( s.typhi.rep2 )
    }

[Package IONiseR version 2.16.0 Index]