modelRatesNF {INSPEcT} | R Documentation

## Launch the modeling process without imposing sigmoid/impulse functional form

### Description

This method compute confidence intervals for the rates of synthesis, degradation and processing estimated by `newINSPEcT` that will be used to estimate the variability of each rate in `ratePvals` method.

### Usage

    modelRatesNF(object, BPPARAM = SerialParam())

    ## S4 method for signature 'INSPEcT'
    modelRatesNF(object, BPPARAM = SerialParam())

### Arguments

`object` | An object of class INSPEcT
`BPPARAM` | Parallelization parameters for bplapply. By default SerialParam()

### Value

An object of class INSPEcT with modeled rates

### Examples

    if( Sys.info()["sysname"] != "Windows" ) {
    	nascentInspObj10 <- readRDS(system.file(package='INSPEcT', 'nascentInspObj10.rds'))
    	## models removal
    	nascentInspObjThreeGenes <- removeModel(nascentInspObj10[1:3])
    	nascentInspObjThreeGenes <- modelRatesNF(nascentInspObjThreeGenes,
    	  BPPARAM=SerialParam())
    	## view modeled synthesis rates
    	viewModelRates(nascentInspObjThreeGenes, 'synthesis')
    	## view gene classes
    	geneClass(nascentInspObjThreeGenes)
    }

[Package INSPEcT version 1.22.0 Index]