RenameAllClusters {ILoReg} | R Documentation

## Renaming all clusters at once

### Description

RenameAllClusters function enables renaming all cluster at once.

### Usage

    RenameAllClusters.SingleCellExperiment(object, new.cluster.names)

    ## S4 method for signature 'SingleCellExperiment'
    RenameAllClusters(object, new.cluster.names = "")

### Arguments

`object` | of `SingleCellExperiment` class
`new.cluster.names` | object of class 'iloreg'

### Value

object of `SingleCellExperiment` class

### Examples

    library(SingleCellExperiment)
    sce <- SingleCellExperiment(assays = list(logcounts = pbmc3k_500))
    sce <- PrepareILoReg(sce)
    ## These settings are just to accelerate the example, use the defaults.
    sce <- RunParallelICP(sce,L=2,threads=1,C=0.1,k=5,r=1)
    sce <- RunPCA(sce,p=5)
    sce <- HierarchicalClustering(sce)
    sce <- SelectKClusters(sce,K=5)
    sce <- RenameAllClusters(sce,new.cluster.names=LETTERS[seq_len(5)])

[Package ILoReg version 1.2.0 Index]