RenameCluster {ILoReg} | R Documentation

## Renaming one cluster

### Description

RenameCluster function enables renaming a cluster in 'clustering.manual' slot.

### Usage

    RenameCluster.SingleCellExperiment(object, old.cluster.name, new.cluster.name)

    ## S4 method for signature 'SingleCellExperiment'
    RenameCluster(object, old.cluster.name = "", new.cluster.name = "")

### Arguments

`object` | of `SingleCellExperiment` class
`old.cluster.name` | a character variable denoting the old name of the cluster
`new.cluster.name` | a character variable the new name of the cluster

### Value

object of `SingleCellExperiment` class

### Examples

    library(SingleCellExperiment)
    sce <- SingleCellExperiment(assays = list(logcounts = pbmc3k_500))
    sce <- PrepareILoReg(sce)
    ## These settings are just to accelerate the example, use the defaults.
    sce <- RunParallelICP(sce,L=2,threads=1,C=0.1,k=5,r=1)
    sce <- RunPCA(sce,p=5)
    sce <- HierarchicalClustering(sce)
    sce <- SelectKClusters(sce,K=5)
    sce <- RenameCluster(sce,1,"cluster1")

[Package ILoReg version 1.2.0 Index]