gi_list_binsize_detect {HiCDCPlus} | R Documentation

## gi_list_binsize_detect

### Description

This function finds the bin size of a uniformly binned valid gi_list instance in bp. It raises an error if the gi_list instance is not uniformly binned.

### Usage

    gi_list_binsize_detect(gi_list)

### Arguments

`gi_list` | gi_list object to be verified. In order to pass without errors, a gi_list object (1) has to be a list of InteractionSet::GInteractions objects,(2) each list element has to be named as chromosomes and only contain intra-chromosomal interaction information, (3) `mcols(.)` for each list element should at least contain pairwise genomic distances in a column named 'D' and (4) each list element needs to be uniformly binned

### Value

uniform binsize in base pairs or an error if the gi_list instance is not uniformly binned.

### Examples

    gi_list<-generate_binned_gi_list(1e6,chrs='chr22')
    gi_list_binsize_detect(gi_list)

[Package HiCDCPlus version 1.0.0 Index]