get_enzyme_cutsites {HiCDCPlus} | R Documentation

## get_enzyme_cutsites

### Description

This function finds all restriction enzyme cutsites of a given genome, genome version, and set of cut patterns

### Usage

    get_enzyme_cutsites(sig, gen = "Hsapiens", gen_ver = "hg19", chrs = NULL)

### Arguments

`sig` | a set of restriction enzyme cut patterns (e.g., 'GATC' or c('GATC','GANTC'))
`gen` | name of the species: e.g., default `'Hsapiens'`
`gen_ver` | genomic assembly version: e.g., default `'hg19'`
`chrs` | a subset of chromosomes' e.g., c('chr21','chr22'). Defaults to all chromosomes (except Y and M) in the genome specified by `gen` and `gen_ver`.

### Value

list of chromosomes.

### Examples

    get_enzyme_cutsites(gen='Hsapiens',gen_ver='hg19',
    sig=c('GATC','GANTC'),chrs=c('chr22'))

[Package HiCDCPlus version 1.0.0 Index]