gtoxRun {GladiaTOX} | R Documentation

## Perform data processing

### Description

`gtoxRun` is the function for performing the data processing, for both single-concentration and multiple-concentration formats.

### Usage

    gtoxRun(asid = NULL, slvl, elvl, id = NULL, type = "mc",
    mc.cores = NULL, outfile = NULL, runname = NULL)

### Arguments

`asid` | Integer, assay source id
`slvl` | Integer of length 1, the starting level to process
`elvl` | Integer of length 1, the ending level to process
`id` | Integer, rather than assay source id, the specific assay component or assay endpoint id(s) (optional)
`type` | Character of length 1, the data type, "sc" or "mc"
`mc.cores` | Integer of length 1, the number of cores to use, set to 1 when using Windows operating system
`outfile` | Character of length 1, the name of the log file (optional)
`runname` | Character of length 1, the name of the run to be used in the oufile (optional)

### Details

The `gtoxRun` function is the core processing function within the package. The function acts as a wrapper for individual processing functions, (ie. `mc1`, `sc1`, etc.) that are not exported. If possible, the processing is done in parallel by 'id' by utilizing the `mclapply` function within the parallel package.

If slvl is less than 4, 'id' is interpreted as acid and if slvl is 4 or greater 'id' is interpreted as aeid. Must give either 'asid' or 'id'. If an id fails no results get loaded into the database, and the id does not get placed into the cue for subsequent level processing.

The 'type' parameter specifies what type of processing to complete: "mc" for multiple-concentration processing, and "sc" for single-concentration processing.

### Value

A list containing the results from each level of processing. Each level processed will return a named logical vector, indicating the success of the processing for the id.

### Examples

    ## Process data for asid 1

    ## Process data
    gtoxRun(asid = 1L, slvl = 1, elvl = 6, mc.cores = 2)

[Package GladiaTOX version 1.8.0 Index]