# GWAS for Selfing Species

## Documentation for package ‘GWAS.BAYES’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

aggregate_SNPs | aggregate_SNPs
cor_plot | cor_plot(SNPs,significant,info = FALSE)
eigenMapMatMult2 | eigenMapMatMult2
eigenMapMatMult3 | eigenMapMatMult3
ga_modelselection_nopc | ga_modelselection_nopc
ga_modelselection_nopc_new | ga_modelselection_nopc_new
ga_modelselection_pcs | ga_modelselection_pcs
ga_modelselection_pcs_new | ga_modelselection_pcs_new
level_function | level_function
log_profile_likelihood_REML | log_profile_likelihood_REML
optim_llik_RE_BIC | optim_llik_RE_BIC
optim_llik_RE_p | optim_llik_RE_p
optim_llik_SLR_BIC | optim_llik_SLR_BIC
optim_llik_SLR_p | optim_llik_SLR_p
pca_function | pca_function
postGWAS | postGWAS
postGWAS_Haplotype | postGWAS_Haplotype
preprocess_SNPs | preprocess_SNPs
preselection | preselection
preselection_nopc | preselection_nopc
preselection_pc | preselection_pc
Pval_function | Pval_function
RealDataInfo | RealDataInfo
RealDataKinship | RealDataKinship
RealDataSNPs_Y | RealDataSNPs_Y
resids_diag | resids_diag
SNP_data_function_nopcp | SNP_data_function_nopcp
SNP_data_function_pcp | SNP_data_function_pcp
standardize | standardize
vignette_kinship_dat | vignette_kinship_dat
vignette_lm_dat | vignette_lm_dat